Here is some things I've found to make your life easier when doing this.
First off from this fellow:
http://stackoverflow.com/questions/7221757/run-automatically-program-on-startup-under-linux-ubuntu
you want to create an init script called 'yourscript' and put in init.d, make it excecutable and add it to the update-rc.d with default parameters as below
sudo mv /filename /etc/init.d/
sudo chmod +x /etc/init.d/filename
sudo update-rc.d filename defaults
If you've never created an init script before there is a template on github:
which details the adding and use.
Once added these are helpful commands:
/etc/init.d/algorithms start
/etc/init.d/algorithms stop
/etc/init.d/algorithms status
Also anything you put on stdout and stderr should show up in the log files here:
/var/log/scriptname.log and error output to /var/log/scriptname.err.
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